College of Science and Mathematics » Department of Biology
141 achievements

141 achievements

Andrews, David
Tanner, D., & Andrews, D.  (2012). Technology as a vehicle for education reform.  International Journal of Information and Communication Technology Education. 415-418.
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Blumenshine, Steven C.
Blumenshine, S.  (2012). Environmental Factors Affecting the Dynamics of Chinese Mitten Crab Zoeae in the San Francisco Bay-Delta: A Tool for Predictions of Future Adult Migrations.  Aquatic Invasions. 7(1), 111-124.
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Moss, R., Blumenshine, S., Yee, J., & Fleskes, J.  (2009). Emergent insect production in post-harvest flooded agricultural fields used by waterbirds.  Wetlands. 29(3), 875-883.
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Blumenshine, S., Piumsonboon, A., Gunbua, V., & Paphavasit, N.  (2007). Factors affecting spatial and temporal variation in water quality and plankton: Case study in the Bangpakong River.  Thailand Journal of Science. 11-27.
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Bush, Jason A.
Bush, J., Kitaura, H., Ma, Y., Teitelbaum, S., Ross, F., & Smith, J.  (2012). Comparative proteomic analysis of a cytosolic fraction from b3 integrin-deficient cells.  Cancer Genomics & Proteomics. 9(1), 1-13.
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Amirikia, K., Mills, P., Bush, J., & Newman, L.  (2011). Higher population-based incidence rates of triple-negative breast cancer among young African-American women.  Cancer. 117(12), 2747-2753.
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Morshedian, S., Contreras, C., Hamud, W., Dhakal, B., Khanal, B., & Bush, J.  (2011). Anti-angiogenic effects of zoledronic acid on osteotropic breast cancer cells. Presented at Experimental Biology Meeting, Washington, DC.
Hale, J., Yamamoto, F., & Bush, J.  (2010). Proteomic evaluation of pesticide-resistant breast cancer cell lines. Presented at Experimental Biology Meeting, Anaheim, CA.
Morshedian, S., Contreras, C., & Bush, J.  (2010). Zoledronic acid (Zometa®) preferentially induces cell death in a bone-metastasizing breast cancer cell line. Presented at Special Conference of the American Association of Cancer Research, San Diego, CA.
Morshedian, S., Contreras, C., & Bush, J.  (2010). Zoledronic acid increases anti-angiogenic factors in an osteotropic breast cancer cell line. Presented at Experimental Biology Meeting, Anaheim, CA.
Piestrup, N., Liu, J., & Bush, J.  (2010). Development of Protocols for Enrichment of Specific Endocytic Vesicles Involved in β3 Integrin Recycling in a Cell Culture Model. Presented at 31st Annual Central California Research Symposium.
Carillo, B., Villalvazo, A., Nitido, A., Ritchey, J., & Bush, J.  (2009). Multi-drug resistant ovarian cancer cells are less susceptible to orlistat-induced cell death. Presented at 2nd Cancer Health Disparities–Minorities in Cancer Research, Carefree, AZ.
Chu, R., Miller, S., & Bush, J.  (2009). Secretome Analyses from Staged Pancreatic Cancer Cell Lines. Presented at 5th US Human Proteome Organization (USHUPO), San Diego, CA.
Calderon-Urrea, Alejandro
Bahaji, A., Padukkavidana, T., Gaeta, R., Tristan, C., Polack, G., & Calderón-Urrea, A.  (2012). Expression of the cell death protein CED-4 of Caenorhabditis elegans in transgenic tobacco plants confers resistance to Meloidogyne incognita.  Plant Biotechnology Reports.
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Calderon-Urrea, A.  (2012). Overexpression of Sense- and Anti-Sense Orientations of ced9 in Tobacco Plants Confers Tolerance to Meloidogyne incognita.  Plant Biotechnology Reports.
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Attar, S., O’Brien, Z., Alhaddad, H., Golden, M., & Calderon-Urrea, A.  (2011). Ferrocenyl Chalcones vs. Organic Chalcones: A Comparative Study of Their Nematocidal Activity.  Bioorganic and Medicinal Chemistry. 2055-2073.
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Cheng, D., & Calderón-Urrea, A.  (2011). Nontemplate polymerization of free nucleotides into genetic elements by thermophilic DNA polymerase in vitro.  Nucleosides, Nucleotides & Nucleic acids. 30(11), 979-990.
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Kim, J., Laparra, H., Urrea, A., Mottinger, J., Moreno, M., & Dellaporta, S.  (2007). Cell Cycle Arrest of Stamen Initials in Maize Sex Determination.  Genetics. 177(4), 2547-2551.
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Constable, John
Kurimoto, T., Constable, J., & Huda, A.  (2010). Effects of Ionizing Radiation Exposure on Arabidopsis Thaliana.  Health Physics Journal. 99(1), 49-57.
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Kurimoto, T., Constable, J., Hood, S., & Huda, A.  (2007). Response of Arabidopsis thaliana to Ionizing Radiation. Presented at American Institute of Physics Conference, New York.
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Crosbie, Paul
Boyce, W., Shender, L., Schultz, L., Vickers, W., Johnson, C., Ziccardi, M., ... Sykes, J.  (2011). Survival analysis of dogs diagnosed with canine peritoneal larval cestodiasis (Mesocestoides spp.).  Veterinary Parasitology.
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Padgett, K., Crosbie, P., & Boyce, W.  (2011). Mesocestoides.  Molecular Detection of Human Parasitic Pathogens. CRC Press.
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Rejmanek, D., Miller, M., Grigg, M., Crosbie, P., & Conrad, P.  (2010). Molecular characterization of Sarcocystis neurona strains from opossums (Didelphis virginiana) and several intermediate hosts from Central California.  Veterinary Parasitology. 170(1-2), 20-9.
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Katti, Madhusudan V.
Katti, M.  (2012). Lost sounds.  Current Conservation. 5(2).
Katti, M., Özgöc-Çaglar, D., Reid, S., Schleder, B., Bushoven, J., Jones, A., & Delcore, H.  (2011). Interactions between urban water policy, residential irrigation, and plant & bird diversity in the Fresno-Clovis Metro Area.  Nature Precedings.
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Katti, M.  (2011). Conserving biodiversity in the midst of human enterprise.  Current Conservation. 4(1).
Robin, V., Katti, M., Purushotham, C., Sancheti, A., & Sinha, A.  (2011). Singing in the sky: Song variation in an endemic bird on the sky islands of southern India.  Animal Behaviour. 82(3), 513-520.
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Walker, J., Balling, R., Briggs, J., Katti, M., Warren, P., & Wentz, E.  (2008). Birds of a feather: Interpolating distribution patterns of urban birds.  Computers, Environment, and Urban Systems. 19-28.
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Anderies, J., Katti, M., & Shochat, E.  (2007). Living in the city: Resource availability, predation, and bird population dynamics in urban areas.  Journal of Theoretical Biology. 36-49.
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Warren, P., Katti, M., Ermann, M., & Brazel, A.  (2006). Urban Bioacoustics: Its not just noise.  Animal Behaviour. 491-502.
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Kern, Ruth Ann
Zald, H., Gray, A., North, M., & Kern, R.  (2008). Initial tree regeneration responses to fire and thinning treatments in a Sierra Nevada mixed-conifer forest, USA.  Forest Ecology and Management. 256(1-2), 168-179.
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Kovacs, Shirley
Kovacs, S., Wright, A., Stearns, T., & Vozikis, G.  (2010). Biotechnology & Entrepreneurship: Active Innovation Learning Across Disciplines.  Small Business Innovation Journal. 1-22.
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Muller, Ulrike
Kim, H., C, S., T, M., S, C., A, G., F, M., ... K, M.  (2010). The effects of the glutamate agonist BMAA on the walking behavior of adult fruit flies. Presented at Annual Meeting of the Society for Integrative and Comparative Biology, Seattle WA.
McHenry, W., Michel, K., Stewart, W., & Müller, U.  (2010). Hydrodynamic sensing does not facilitate active drag reduction in the golden shiner (Notemigonus crysoleucas).  The Journal of Experimental Biology. 1309-1319.
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Fontaine, E., Lentink, D., Kranenbarg, S., Müller, U., Van Leeuwen, J., Barr, A., & Burdick, J.  (2008). Automated visual tracking for studying the ontogeny of zebrafish swimming.  Journal of Experimental Biology. 1305-1316.
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Prince, James
Prince, J., Cheng, D., & Fernandez Otero, C.  (2012). Mapping complex traits in Capsicum.  Genetics, Genomics, and Breeding in Crop Plants: Pepper. Blackwell Publishing, Inc..
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Brewer, H., Garcia, C., Cheng, D., Sidhu, G., Bosland, B., Van Deynze, A., & Prince, J.  (2011). A unified race scheme for Phytophthora capsici and the correlation of resistance in pepper with the presence of the Phyto 5.2 QTL. Presented at Plant and Animal Genome XIX.
Cheng, D., Follen, N., Hild, J., Salehi, K., Banuelos, G., & Prince, J.  (2011). Association of SSR markers with Na and B tolerance in poplar. Presented at Plant and Animal Genome XIX.
Van Deynze, A., Hill, T., Prince, J., Yarnes, S., Chunthawodtiporn, J., Rehrig, W., ... Kozik, A.  (2011). Development and application of genomic tools in pepper. Presented at Plant and Animal Genome XIX.
Van Deynze, A., Hill, T., Yarnes, S., Rehrig, W., Reyes Chin-Wo, S., Ashrafi, H., ... Prince, J.  (2011). An integrated approach to breeding resistance to Phytophthora capsici in pepper.  Plant and Animal Genome XIX.
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Donnelly, L., Jenderek, M., Brown, A., Prince, J., Reeves, P., & Hannan, R.  (2009). Genetic diversity in the USDA Limnanthes germplasm collection assessed by simple sequence repeats.  Plant Genetic Resources: Characterisation and Utilisation. 7(1), 33-41.
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Glosier, B., Ogundiwin, E., Sidhu, G., Sischo, D., & Prince, J.  (2008). A differential series of pepper (Capsicum annuum) lines delineates fourteen physiological races of Phytophthora capsici.  Euphytica. 162(1), 23-30.
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Glosier, B., Ogundiwin, E., Sidhu, G., Sischo, D., & Prince, J.  (2007). A differential series of pepper (Capsicum annuum) lines delineates fourteen physiological races of Phytophthora Capsici.  Euphytica. 162(1-2), 23-30.
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Labate, J., Grandillo, S., Fulton, T., Muños, S., Caicedo, A., Peralta, I., ... Causse, M.  (2006). Tomato.  Genome mapping and molecular breeding in plants. Berlin; [Great Britain]: Springer.
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Ogundiwin, E., Berke, T., Massoudi, M., Black, L., Huestis, G., Choi, D., ... Prince, J.  (2005). Construction of 2 intraspecific linkage maps and identification of resistance QTLs for Phytophthora capsici root-rot and foliar-blight diseases of pepper (Capsicum annuum L.).  Genome. 48(4), 698-711.
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Quirin, E., Ogundiwin, E., Prince, J., Mazourek, M., Briggs, M., Chlanda, T., ... Jahn, M.  (2005). Development of sequence characterized amplified region (SCAR) primers for the detection of Phyto.5.2, a major QTL for resistance to Phytophthora capsici Leon. in pepper.  Theoretical and Applied Genetics. 110(4), 605-12.
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Zewdie, Y., Havey, M., Prince, J., & Jenderek, M.  (2005). The First Genetic Linkages among Expressed Regions of the Garlic Genome.  Journal - American Society for Horticultural Science. 130(4), 569-574.
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Kuhl, J., Cheung, F., Yuan, Q., Martin, W., Zewdie, Y., McCallum, J., ... Havey, M.  (2004). A Unique Set of 11,008 Onion Expressed Sequence Tags Reveals Expressed Sequence and Genomic Differences between the Monocot Orders Asparagales and Poales.  The Plant Cell. 16(1), 114-125.
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Prince, J., & Ogundiwin, E.  (2004). Molecular mapping and marker-assisted selection of quantitative trait loci (QTL) in plants.  Handbook of Plant Biotechnology. Hoboken, N.J.: John Wiley & Sons.
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Livingstone, K., Zhang, Y., Lackney, V., Prince, J., Blauth, J., & Kyle Jahn, M.  (1998). An update on Capsicum mapping activities at Cornell. Presented at Eucarpia.
Okuda, S., Prince, J., Davis, R., Dally, E., Lee, I., Mogen, B., & Kato, S.  (1997). Two Groups of Phytoplasmas from Japan Distinguished on the Basis of Amplification and Restriction Analysis of 16S rDNA.  Plant Disease. 81(3), 301-305.
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Prince, J., Zhang, Y., Radwanski, E., & Kyle, M.  (1997). A Versatile and High-yielding Protocol for the Preparation of Genomic DNA from Capsicum spp. (Pepper).  HortScience. 32(5), 937.
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Smart, C., Garvin, D., Prince, J., & Lucas, W.  (1997). The molecular basis of potassium nutrition in plants.  Plant and Soil. 81.
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Prince, J., Lackney, V., Angeles, C., Blauth, J., & Kyle, M.  (1995). A survey of DNA polymorphism within the genus Capsicum and the fingerprinting of pepper cultivars.  Genome. 38(2), 224-31.
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Davis, R., & Prince, J.  (1994). Molecular Diagnosis of Mycoplasma-like Organisms (MLOs) in Plants.  Applied Biochemistry and Biotechnology. 48(1), 23.
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Wolf, T., Prince, J., & Davis, R.  (1994). Occurrence of Grapevine Yellows in Virginia Vineyards.  Plant Disease. 78(2), 208.
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Bianco, P., Davis, R., Prince, J., Gundersen, D., Fortusini, A., & Belli, G.  (1993). Double and single infections by aster yellows and elm yellows MLOs in grapevines with symptoms characteristic of flavescence dorée.  Rivista di Patologia Vegetale. 3(3), 69-82.
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Davis, R., Bertaccini, A., Prince, J., & Vibio, M.  (1993). Infection of grapevines in Emilia-Romagna, Italy, by mycoplasmalike organisms (MLOs) related to Italian periwinkle virescence MLO: evidence from enzymatic amplification.  Phytopathol Medit. 149-152.
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Newman, S., Eannetta, N., Yu, H., Prince, J., Carmen de Vicente, M., Tanksley, S., & Steffens, J.  (1993). Organization of the tomato polyphenol oxidase gene family.  Plant Molecular Biology. 21(6), 1035-1051.
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Prince, J., Davis, R., Wolf, T., & Lee, I.  (1993). Molecular Detection of Diverse Mycoplasmalike Organisms (MLOs) Associated with Grapevine Yellows and Their Classification with Aster Yellows, X-Disease, and Elm Yellows MLOs.  Phytopathology. 83(10), 1130.
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Prince, J., Pochard, E., & Tanksley, S.  (1993). Construction of a molecular map of pepper and comparisons of syntenic relationships with tomato.  Genome. 36(3), 404-417.
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Davis, R., Prince, J., Hammond, R., Lee, I., Bertaccini, A., & Credi, R.  (1992). Detection of Italian periwinkle virescence mycoplasmalike organism (MLO) and evidence of its relatedness with aster yellows MLOs based on polymerase chain reaction amplification of DNA.  Petria. 184-193.
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Prince, J., Loaiza-Figueroa, F., & Tanksley, S.  (1992). Restriction fragment length polymorphism and genetic distance among Mexican accessions of Capsicum.  Genome. 35(5), 726.
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Tanksley, S., Ganal, M., Prince, J., de-Vicente, M., Bonierbale, M., Broun, P., ... Young, N.  (1992). High density molecular linkage maps of the tomato and potato genomes.  Genetics. 132(4), 1141-60.
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Osborne, B., Corr, C., Prince, J., Hehl, R., Tanksley, S., McCormick, S., & Baker, B.  (1991). Ac transposition from a T-DNA can generate linked and unlinked clusters of insertions in the tomato genome.  Genetics. 129(3), 833-44.
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Tanksley, S., Bernatzky, R., Lapitan, N., & Prince, J.  (1988). Conservation of Gene Repertoire but not Gene Order in Pepper and Tomato.  Proceedings of the National Academy of Sciences of the United States of America. 85(17), 1.
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Rawat, Mamta
Newton, G., Fahey, R., & Rawat, M.  (2012). Detoxification of toxins by bacillithiol in Staphylococcus aureus.  Microbiology. 158(4), 1117-1126.
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Upton, H., Newton, G., Gushiken, M., Lo, K., Holden, D., Fahey, R., & Rawat, M.  (2012). Characterization of BshA, bacillithiol glycosyltransferase from Staphylococcus aureus and Bacillus subtilis.  FEBS Letters. 586(7), 1004-1008.
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Newton, G., Leung, S., Fahey, R., Wakabayashi, J., & Rawat, M.  (2011). The DinB superfamily includes novel mycothiol, bacillithiol, and glutathione S-transferases.  Biochemistry. 50(49), 10751-10760.
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Gaballa, A., Newton, G., Antelmann, H., Parsonags, D., Upton, H., Rawat, M., ... Helmann, J.  (2010). Biosynthesis of Bacillithiol and Function in Bacilli. Presented at Proceedings of the National Academy of Sciences.
Newton, G., Rawat, M., La Clair, J., Jothivasan, V., Budiarto, T., Hamilton, C., ... Fahey, R.  (2009). Bacillithiol is an antioxidant thiol produced in Bacilli.  Nature Chemical Biology. 625-627.
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Riley, L., Fox, B., Breves, J., Dorough, C., Kaiya, H., Hirano, T., & Grau, E.  (2008). Absence of Effects of Short-Term Fasting on Plasma Ghrelin and Brain Expression of Ghrelin Receptors in the Tilapia, Oreochromis mossambicus.  Zoological Science. 25(8), 821-7.
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Guerra-Lopez, D., Daniels, L., & Rawat, M.  (2007). Mycobacterium smegmatis mc2 155 fbiC and MSMEG_2392 are involved in triphenylmethane dye decolorization and coenzyme F420 biosynthesis.  Microbiology. 153(8), 2724-2732.
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Miller, C., Johnson, T., Rawat, M., & Av-Gay, Y.  (2007). Innate protection of Mycobacterium smegmatis against the antimicrobial activity of nitric oxide is provided by the low molecular weight thiol mycothiol.  Antimicrobial Agents and Chemotherapy. 3364-3366.
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Rawat, M., Johnson, C., Cadiz, V., & Av-Gay, Y.  (2007). Comparative analysis of mutants disrupted in mycothiol biosynthesis.  Biochemistry and Biophysical Research Communications. 71-76.
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Pick, N., Rawat, M., Arad, D., Lan, J., Kende, A., & Av-Gay, Y.  (2006). Antimicrobial Properties of Bromo-Tyrosine ALkaloids.  Journal of Medical Microbiology. 407-415.
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Dosanjh, N., Rawat, M., Li, J., & Av-Gay, Y.  (2005). Thiol Specific Oxidative Stress Response in Mycobacteria.  FEMS Microbiology Letters. 87-94.
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Riley Jr, Larry G.
Peterson, B., Waldbieser, G., Riley, L., Upton, K., Kobayashi, Y., & Small, B.  (2012). Pre- and postprandial changes in orexigenic and anorexigenic factors in channel catfish (Ictalurus punctatus).  General and Comparative Endocrinology. 176(2), 231-239.
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Upton, K., & Riley, L.  (2011). Neuroendocrine Regulation of Food Intake During Acute Stress in the Tilapia, Oreochromis mossambicus. Presented at Society for Integrative and Comparative Biology, Salt Lake City, UT.
Janzen, W., & Riley, L.  (2010). The Effects of Acute Cortisol Administration on Appetite Control in the Tilapia. Presented at Society for Integrative and Comparative Biology, Seattle, WA.
Luzania, R., Upton, K., Earley, R., & Riley, L.  (2010). The effects of fasting and re-feeding on the neuroendocrine control of appetite in tilapia, Oreochromis mossambicus. Presented at Society for Integrative and Comparative Biology, Seattle, WA.
Riley, L.  (2010). Endocrine Control of Appetite and Growth during Stress in the Tilapia (Oreochromis mossambicus). Presented at National Research Initiative and Agriculture and Food Research Initiative Animal Growth and Nutrient Utilization Annual Investigator Meeting, Denver, Co.
Schwandt, S., Peddu, S., & Riley, L.  (2010). Differential roles for octanoylated and decanoylated ghrelins in regulating appetite and metabolism.  International Journal of Peptides. 6.
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Upton, K., & Riley, L.  (2010). Endocrine Control of Appetite During Stress in Tilapia, Oreochromis mossambicus.  World Aquaculture Society.
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Kaiya, H., Riley, L., Janzen, W., Hirano, T., Grau, E., Miyazato, M., & Kangawa, K.  (2009). Ghrelin receptor (GHS-R)-like receptor and its genomic organisation in Mozambique tilapia, Oreochromis mossambicus.  Zoological Science. 330-337.
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Riley, L., Walker, A., Dorough, C., Schwandt, S., Hirano, T., & Grau, E.  (2009). Glucose Regulates Ghrelin, Neuropeptide Y, and the GH/IGF-I Axis in the Tilapia, Oreochromis mossambicus.  Comparative Biochemistry and Physiology. 154(4), 541-546.
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Walker, A., Devadi, R., & Riley, L.  (2009). Temperature and Fasting Differentially Regulate Glucose Metabolism and Ghrelin Levels in the Tilapia (Oreochromis mossambicus). Presented at Society for Integrative and Comparative Biology, Boston, MA.
Shoemaker, J., Riley, L., Hirano, T., Grau, E., & Rubin, D.  (2006). Differential Expression of G6Pase and Tip38 in Freshwater and Saltwater Acclimated Tilapia: Implications of Adaptability for a Euryhaline Species.  General and Comparative Endocrinology. 146(2), 186-194.
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Riley, L., Fox, B., Kaiya, H., Hirano, T., & Grau, E.  (2005). Long-Term Treatment of Ghrelin Stimulates Feeding, Fat Deposition and Alters the GH/IGF-I Axis in the Tilapia, Oreochromis Mossambicus.  General and Comparative Endocrinology. 234-240.
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Schreiber, Frederick E.
Alhaddad, H., Schreiber, F., Coudron, T., & Backus, E.  (2011). Comparative behavioral and protein study of salivary secretions in Homalodisca spp. sharpshooters (Hemiptera: Cicadellidae: Cicadellinae).  Annals of the Entomological Society of America. 104(3), 543-552.
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Backus, E., Holmes, W., Schreiber, F., Reardon, B., & Walker, G.  (2009). Sharpshooter X Wave: Correlation of an Electrical Penetration Graph Waveform with Xylem Penetration Supports a Hypothesized Mechanism for Xylella fastidiosa Inoculation.  Annals of the Entomological Society of America. 102(5), 847-867.
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Cardenas, F., Vail, P., Hoffmann, D., Tebbets, J., & Schreiber, F.  (1997). Infectivity of Celery Looper (Lepidoptera: Noctuidae) Multiple Nucleocapsid Polyhedrosis Virus to Navel Orangeworlll (Lepidoptera: Pyralidae).  Environmental Entomology. 26(1), 131-134.
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Elam, P., Vail, P., & Schreiber, F.  (1990). Infectivity of <i>Autographa californica</i> nuclear polyhedrosis virus extracted with digestive fluids of <i>Heliothis zea, Estigmene acrea</i>, and carbonate solutions.  Journal of Invertebrate Pathology. 55(2), 278-283.
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Cowan, D., Vail, P., Kok-Yokomi, M., & Schreiber, F.  (1986). Formulation of a Granulosis Virus of Plodia interpunctella (Hubner) (Lepidoptera: Pyralidae): Efficacy, Persistence, and Influence on Oviposition and Larval Survival.  Journal of Economic Entomology. 79(4), 1085-1090.
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Brandl, D., Soderstrom, E., & Schreiber, F.  (1983). Effects of Low-Oxygen Atmospheres Containing Different Concentrations of Carbon Dioxide on Mortality of the Navel Orangeworm, Amyelois transitella Walker (Lepidoptera: Pyralidae).  Journal of Economic Entomology. 76(4), 828-830.
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Moshy, A., Leigh, T., Foster, K., & Schreiber, F.  (1983). Screening Selected Cowpea, Vigna unguiculata (L.) Walp., Lines for Resistance to Lygus hesperus (Heteroptera: Miridae).  Journal of Economic Entomology. 76(6), 1370-1373.
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Tsukimura, Brian
Stillman, J., Wake, M., Denny, M., Padilla, D., Patek, S., & Tsukimura, B.  (2011). Grand opportunities: Strategies for addressing grand challenges in organismal animal biology.  Integrative and Comparative Biology. 51(1), 7-13.
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Tran, M., & Tsukimura, B.  (2010). Effects of methyl farnesoate on cyst production and growth in Triops longicaudatus. Presented at Annual Meeting of the Society for Integrative and Comparative Biology, Seattle, WA.
Tsukimura, B., Gledhill, M., & Tran, M.  (2010). Methyl farnesoate regulation of regulation in the tadpole shrimp, Triops longicaudatus: Examination of methyl farnesoate esterase levels. Presented at International Crustacean Congress 7, Qingdao, P.R. China.
Thompson, J., Tsukimura, B., Gonzales, V., & Wolford, J.  (2009). Continued Presence of the Chinese Mitten Crab in the San Francisco Bay and Delta.  State of the San Francisco Estuary Conference.
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Tsukimura, B., Gledhill, M., & Tran, M.  (2009). Methyl farnesoate esterase activity during tadpole shrimp, Triops longicaudatus, development and after methyl farnesoate treatment. Presented at Crustacean Society Annual Summer Meeting, Shinagawa Japan.
Tsukimura, B., & Gonzales, V.  Environmental factors influence population dynamics of the mitten crab, Eriocheir sinensis, in San Francisco Bay. Presented at 6th International Conference on Marine Bioinvasions, Portland, OR.
Wright, Alice
Kovacs, S., Wright, A., Stearns, T., & Vozikis, G.  (2010). Biotechnology & Entrepreneurship: Active Innovation Learning Across Disciplines.  Small Business Innovation Journal. 1-22.
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Youn, Hwan
Benabbas, A., Karunakaran, V., Champion, P., Youn, H., & Poulos, T.  (2012). Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.  Journal of Biological Chemistry. 287(26), 21729-21740.
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Karunakaran, V., Benabbas, A., Champion, P., & Youn, H.  (2011). Vibrational coherence spectroscopy of the heme domain in the co-sensing transcriptional activator CooA.  Journal of the American Chemical Society. 133(46), 18816-18827.
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Serate, J., Roberts, G., Berg, O., & Youn, H.  (2011). Ligand responses of Vfr, the virulence factor regulator from Pseudomonas aeruginosa.  Journal of Bacteriology. 193(18), 4859-4868.
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Youn, H., Serate, J., & Berg, O.  (2011). Contribution of Vfr’s unique ligand response to its physiological function. Presented at 111th American Society for Microbiology (ASM) General Meeting, New Orleans, Louisiana.
Youn, H., Hicks, M., & Serate, J.  (2010). Directed evolution of Escherichia coli cAMP receptor protein at the cAMP-binding pocket.  110th American Society for Microbiology (ASM). San Diego, California.
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Lee, A., Clark, R., Ponter, S., Burstyn, J., & Youn, H.  (2009). Guanidine hydrochloride-induced unfolding of the three heme coordination states of the CO-sensing transcription factor, CooA.  Biochemistry. 48(28), 6585-6597.
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Kerby, R., Youn, H., & Roberts, G.  (2008). RcoM: A new single-component transcriptional regulator of CO metabolism in bacteria.  Journal of Bacteriology. 190(9), 3336-3343.
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Marvin, K., Burstyn, J., Kerby, R., Youn, H., & Roberts, G.  (2008). The transcription regulator RcoM-2 from Burkholderia xenovorans is a cysteine-ligated hemoprotein that undergoes a redox-mediated ligand switch.  Biochemistry. 47(34), 9016-9028.
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Youn, H., Roberts, G., & Koh, J.  (2008). Two-state allosteric modeling suggests protein equilibrium as an integral component for cyclic AMP (cAMP) specificity in the cAMP receptor protein of Escherichia coli.  Journal of Bacteriology. 190(13), 4532-4540.
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Clark, R., Youn, H., Lee, A., Roberts, G., & Burstyn, J.  (2007). DNA binding by an imidazole-sensing CooA variant is dependent on the heme redox state.  Journal of Biological Inorganic Chemistry. 12(2), 139-146.
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Ibrahim, M., Kuchinskas, M., Youn, H., Kerby, R., Roberts, G., Poulos, T., & Spiro, T.  (2007). Mechanism of the CO-sensing heme protein CooA: New insights from the truncated heme domain and UVRR spectroscopy.  Journal of Inorganic Biochemistry. 101(11-12), 1776-1785.
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Youn, H., Kerby, R., Koh, J., & Roberts, G.  (2007). A C-helix Residue, Arg-123, Has Important Roles in Both the Active and Inactive Forms of the cAMP Receptor Protein.  Journal of Biological Chemistry. 282(6), 3632-3639.
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Ibrahim, M., Kerby, R., Puranik, M., Wasbotten, I., Youn, H., Roberts, G., & Spiro, T.  (2006). Heme displacement mechanism of CooA activation: Mutational and Raman spectroscopic evidence.  The Journal of biological chemistry. 281(39), 29165-73.
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Youn, H., Conrad, M., Chung, S., & Roberts, G.  (2006). Roles of the heme and heme ligands in the activation of CooA, the CO-sensing transcriptional activator.  Biochemical and Biophysical Research Communications. 348(2), 345-350.
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Youn, H., Kerby, R., Conrad, M., & Roberts, G.  (2006). Study of highly constitutively active mutants suggests how cAMP activates cAMP receptor protein.  The Journal of biological chemistry. 281(2), 1119-27.
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Roberts, G., Kerby, R., Youn, H., & Conrad, M.  (2005). CooA, a paradigm for gas sensing regulatory proteins.  Journal of Inorganic Biochemistry. 99(1), 280-92.
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Youn, H., Thorsteinsson, M., Conrad, M., Kerby, R., & Roberts, G.  (2005). Dual roles of an E-helix residue, Glu167, in the transcriptional activator function of CooA.  Journal of Bacteriology. 187(8), 2573-81.
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Clark, R., Youn, H., Parks, R., Cherney, M., Roberts, G., & Burstyn, J.  (2004). Investigation of the role of the N-terminal proline, the distal heme ligand in the CO sensor CooA.  Biochemistry. 43(44), 14149-60.
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Puranik, M., Nielsen, S., Youn, H., Hvitved, A., Bourassa, J., Case, M., ... Spiro, T.  (2004). Dynamics of carbon monoxide binding to CooA.  The Journal of Biological Chemistry. 279(20), 21096-108.
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Roberts, G., Youn, H., & Kerby, R.  (2004). CO-Sensing Mechanisms.  Microbiology and Molecular Biology Reviews. 68(3), 453-473.
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Youn, H., Kerby, R., Conrad, M., & Roberts, G.  (2004). Functionally critical elements of CooA-related CO sensors.  Journal of Bacteriology. 186(5), 1320-9.
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Youn, H., Kerby, R., & Roberts, G.  (2004). Changing the ligand specificity of CooA, a highly specific heme-based CO sensor.  The Journal of Biological Chemistry. 279(44), 45744-52.
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Coyle, C., Puranik, M., Youn, H., Nielsen, S., Williams, R., Kerby, R., ... Spiro, T.  (2003). Activation mechanism of the CO sensor CooA. Mutational and resonance Raman spectroscopic studies.  The Journal of Biological Chemistry. 278(37), 35384-93.
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Kerby, R., Youn, H., Thorsteinsson, M., & Roberts, G.  (2003). Repositioning about the dimer interface of the transcription regulator CooA: a major signal transduction pathway between the effector and DNA-binding domains.  Journal of Molecular Biology. 325(4), 809-23.
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Youn, H., Kerby, R., & Roberts, G.  (2003). The role of the hydrophobic distal heme pocket of CooA in ligand sensing and response.  The Journal of Biological Chemistry. 278(4), 2333-40.
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Youn, H., Kerby, R., Thorsteinsson, M., Clark, R., Burstyn, J., & Roberts, G.  (2002). Analysis of the L116K variant of CooA, the heme-containing CO sensor, suggests the presence of an unusual heme ligand resulting in novel activity.  The Journal of Biological Chemistry. 277(37), 33616-23.
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Thorsteinsson, M., Kerby, R., Youn, H., Conrad, M., Serate, J., Staples, C., & Roberts, G.  (2001). Redox-mediated transcriptional activation in a CooA variant.  The Journal of Biological Chemistry. 276(29), 26807-13.
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Youn, H., Kerby, R., Thorsteinsson, M., Conrad, M., Staples, C., Serate, J., ... Roberts, G.  (2001). The heme pocket afforded by Gly117 is crucial for proper heme ligation and activity of CooA.  The Journal of Biological Chemistry. 276(45), 41603-10.
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Thorsteinsson, M., Kerby, R., Conrad, M., Youn, H., Staples, C., Lanzilotta, W., ... Roberts, G.  (2000). Characterization of variants altered at the N-terminal proline, a novel heme-axial ligand in CooA, the CO-sensing transcriptional activator.  The Journal of Biological Chemistry. 275(50), 39332-8.
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Youn, H., & Kang, S.  (2000). Enhanced sensitivity of Streptomyces seoulensis to menadione by superfluous lipoamide dehydrogenase.  FEBS Letters. 472(1), 57-61.
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Cho, S., Na, J., Youn, H., Hwang, C., Lee, C., & Kang, S.  (1999). Sepiapterin reductase producing L-threo-dihydrobiopterin from Chlorobium tepidum.  The Biochemical Journal. 497-503.
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Cho, S., Na, J., Youn, H., Hwang, C., Lee, C., & Kang, S.  (1998). Tepidopterin, 1-O-(L-threo-biopterin-2'-yl)-b-N-acetylglucosamine from Chlorobium tepidum.  General Subjects. 1379(1), 53.
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Youn, H., Kwak, J., Youn, H., Hah, Y., & Kang, S.  (1998). Lipoamide dehydrogenase from streptomyces seoulensis: biochemical and genetic properties.  Biochimica et Biophysica Acta. 1388(2), 405-18.
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Youn, H., Youn, H., Lee, J., Yim, Y., Lee, J., Hah, Y., & Kang, S.  (1996). Unique Isozymes of Superoxide Dismutase in Streptomyces griseus.  Archives of Biochemistry and Biophysics. 334(2), 341.
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Zechman, Frederick W.
Olsen, J., Zechman, F., Hoarau, G., Coyer, J., Stam, W., Valero, M., & Åberg, P.  (2010). The phylogeographic architecture of the fucoid seaweed Ascophyllum nodosum: An intertidal marine tree and survivor of more than one glacial-interglacial cycle.  Journal of Biogeography. 842-856.
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Zechman, F., Verbruggen, H., Leliaert, F., Buchheim, J., Fawley, M., Ashworth, M., ... Hanisak, M.  (2010). An unrecognized ancient lineage of green plants persists in deep marine waters.  Journal of Psychology. 46(6), 1288-1295.
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Cocquyt, E., Verbruggen, H., Leliaert, F., Zechman, F., Sabbe, K., & De Clerck, O.  (2009). Gain and loss of elongation factor genes in green algae.  BMC Evolutionary Biology. 1-13.
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Verbruggen, H., Ashworth, M., LoDuca, S., Vlaeminck, C., Cocquyt, E., Sauvage, T., ... Leliaert, F.  (2009). Multi-locus time-calibrated phylogeny of the siphonous green algae.  Molecular Phylogenetics & Evolution. 642-653.
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